SMTL ID : 5zlf.1 (1 other biounit)

CRYSTAL STRUCTURE OF OCTAPRENYL PYROPHOSPHATE SYNTHASE FROM ESCHERICHIA COLI WITH ligand BPH-629

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

1 x B29: [2-(3-DIBENZOFURAN-4-YL-PHENYL)-1-HYDROXY-1-PHOSPHONO-ETHYL]-PHOSPHONIC ACID(Non-covalent)

B29.1: 11 residues within 4Å: Chain A: T.80, D.84, D.88, R.93, V.139, I.142, A.143, E.146 Chain B: L.110, D.113 Ligands: MG.2 10 PLIP interactions: 2 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:L.110, B:D.113, A:T.80, A:D.84, A:I.142, A:A.143, A:E.146 Hydrogen bonds: A:D.88, A:R.93, A:R.93

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.84, D.88, E.146 Ligands: B29.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malwal, S.R. et al., Discovery of Lipophilic Bisphosphonates That Target Bacterial Cell Wall and Quinone Biosynthesis. J.Med.Chem. (2019)

Release Date

2019-03-27

Peptides

Octaprenyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Octaprenyl diphosphate synthase

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