SMTL ID : 5zjg.1 (1 other biounit)

Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with Gly-Gly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GLY: GLYCINE(Non-covalent)

GLY.1: 13 residues within 4Å: Chain A: R.70 Chain B: T.1, T.19, N.21, E.40, D.43, F.54, S.72, S.73, M.74, G.94, I.97 Ligands: GLY.3 7 PLIP interactions: 1 Ligand-Ligand interactions, 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: G.1, B:N.21, B:E.40, B:S.72, B:S.73, B:M.74 Salt bridges: A:R.70 GLY.2: 6 residues within 4Å: Chain B: N.21, W.22, D.23, F.54, W.162 Ligands: GLY.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.23, B:D.23 Water bridges: B:D.23 GLY.3: 11 residues within 4Å: Chain B: T.1, T.19, N.21, F.54, P.92, G.93, G.94, I.97, W.162 Ligands: GLY.1, GLY.2 4 PLIP interactions: 1 Ligand-Ligand interactions, 3 interactions with chain B Hydrogen bonds: G.1, B:T.1, B:G.93, B:G.94

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: W.233, Q.234, I.255, K.258, E.259 Chain B: F.102, L.105, N.106, Y.109, D.110 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:W.233, A:Q.234, A:K.258, B:F.102, B:D.110, B:D.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hibi, T. et al., Crystal structure analysis and enzymatic characterization of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens. Biosci. Biotechnol. Biochem. (2019)

Release Date

2019-01-16

Peptides

Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 L-subunit: A
Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 S-subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 L-subunit

Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 S-subunit

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