SMTL ID : 7d9e.1

Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: A.164, D.165, Q.166, Q.167 Chain B: R.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.165, A:D.165, A:Q.166 GOL.3: 9 residues within 4Å: Chain A: W.257, I.279, K.282, E.283 Chain B: F.102, L.105, N.106, Y.109, D.110 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:W.257, A:K.282, A:E.283, A:E.283, B:N.106, B:D.110

1 x DON: 6-DIAZENYL-5-OXO-L-NORLEUCINE(Covalent)

DON.2: 14 residues within 4Å: Chain A: R.94 Chain B: T.1, T.19, N.21, E.40, D.43, F.54, S.72, S.73, M.74, P.92, G.93, G.94, I.97 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.21, B:E.40, B:S.72, B:S.73, B:S.73, B:S.73, B:M.74, B:G.93, B:G.94 Salt bridges: A:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sano, C. et al., Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens. Biochem.Biophys.Res.Commun. (2021)

Release Date

2021-06-23

Peptides

Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03: A
Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03

Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03

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