SMTL ID : 5zjw.1

Crystal Structure of PAK4 in complex with inhibitor CZg353

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 9EO: (3Z)-N-[(1S)-2-hydroxy-1-phenylethyl]-3-[(1H-imidazol-2-yl)(phenyl)methylidene]-2-oxo-2,3-dihydro-1H-indole-5-carboxamide(Non-covalent)

9EO.1: 22 residues within 4Å: Chain A: I.29, G.30, E.31, G.32, T.34, G.35, I.36, V.37, A.50, K.52, M.54, V.81, M.97, E.98, F.99, L.100, G.103, D.146, L.149, S.159, D.160 Ligands: EDO.4 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.37, A:V.37, A:K.52, A:V.81, A:M.97, A:L.149, A:L.149 Hydrogen bonds: A:K.52, A:E.98, A:L.100, A:L.100, A:D.146, A:D.160 Water bridges: A:A.104, A:D.146, A:S.159, A:S.159, A:D.160, A:F.161

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.60, L.64, F.163, L.177, V.178, G.179 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.61, A:G.179, A:G.179 Water bridges: A:S.33, A:Q.60, A:R.61 EDO.3: 2 residues within 4Å: Chain A: N.232, L.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.233 EDO.4: 8 residues within 4Å: Chain A: G.32, S.33, D.142, K.144, D.160, F.163, T.180 Ligands: 9EO.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.142, A:K.144 Water bridges: A:E.31 EDO.5: 2 residues within 4Å: Chain A: H.3, R.57 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.3, A:H.3, A:R.57 EDO.6: 5 residues within 4Å: Chain A: L.240, V.243, S.244, P.245, K.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.243 EDO.7: 5 residues within 4Å: Chain A: P.186, E.187, S.190, R.257, P.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.257, A:R.257 EDO.8: 3 residues within 4Å: Chain A: M.114, E.116, K.242 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.114, A:K.242 Water bridges: A:R.113, A:M.114 EDO.9: 4 residues within 4Å: Chain A: I.36, K.53, K.58, E.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.92 Water bridges: A:K.58

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.10: 9 residues within 4Å: Chain A: T.106, V.109, T.110, D.146, E.209, G.213, E.214, P.215, F.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.146, A:E.209 Water bridges: A:G.213

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.11: 2 residues within 4Å: Chain A: K.47, Y.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.47, A:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, F. et al., Crystal Structure of PAK4 in complex with inhibitor CZg353. To be published

Release Date

2019-04-03

Peptides

Serine/threonine-protein kinase PAK 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase PAK 4

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