SMTL ID : 5zm0.1

X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: F.235, K.237, T.250, T.251, V.252, L.253, S.254, L.257, L.288, Q.291, L.292, W.294, R.295, F.298, W.354, M.355, H.357, R.360, H.361, A.364, F.383, L.387, D.389, Q.390, D.391, L.394, N.395, N.398, W.399, L.402 Ligands: GOL.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:R.360, A:A.364, A:F.383, A:F.383, A:N.398, A:W.399, A:L.402 Hydrogen bonds: A:K.237, A:T.250, A:T.251, A:T.251, A:V.252, A:L.253, A:S.254, A:S.254, A:S.254, A:H.357, A:R.360, A:D.389, A:D.389, A:D.391, A:N.398, A:N.398 Water bridges: A:S.254, A:H.357 Salt bridges: A:K.237, A:K.237 pi-Cation interactions: A:R.360, A:R.360

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: W.294, F.298, H.357, H.361, N.398, W.401 Ligands: FAD.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.398 Water bridges: A:H.357 GOL.3: 5 residues within 4Å: Chain A: P.41, R.81, P.196, E.200, V.201 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.201 Hydrogen bonds: A:R.81, A:R.81 GOL.4: 4 residues within 4Å: Chain A: S.69, R.73, E.215, T.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.216 Water bridges: A:R.73 GOL.5: 9 residues within 4Å: Chain A: D.323, F.328, D.371, L.372, Y.373, A.478, A.481, C.482, R.485 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.323, A:R.485 Water bridges: A:N.325, A:R.485 GOL.6: 5 residues within 4Å: Chain A: V.210, W.245, E.246, P.248, W.352 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.221 GOL.7: 4 residues within 4Å: Chain A: S.409, Q.410, Y.411, F.412 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.409, A:Q.410 GOL.8: 4 residues within 4Å: Chain A: H.18, D.173, L.219, L.266 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.173, A:D.173, A:D.173, A:E.223, A:R.270 GOL.9: 4 residues within 4Å: Chain A: R.12, F.37, V.38 Ligands: MES.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.38 Water bridges: A:R.12, A:R.113

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.10: 10 residues within 4Å: Chain A: F.37, V.38, L.39, D.40, F.43, R.55, Y.56, L.59, F.259 Ligands: GOL.9 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.390 Salt bridges: A:R.55

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 5 residues within 4Å: Chain A: K.237, P.285, V.286, Q.291, W.294 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: R.413, Y.415, S.416, F.420 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franz, S. et al., Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii. Nucleic Acids Res. (2018)

Release Date

2018-07-25

Peptides

Cryptochrome photoreceptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cryptochrome photoreceptor

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