SMTL ID : 6fn2.1

X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 30 residues within 4Å: Chain A: F.235, K.237, T.250, T.251, V.252, L.253, S.254, L.257, L.288, Q.291, L.292, W.294, R.295, F.298, W.354, M.355, H.357, R.360, H.361, A.364, F.383, L.387, D.389, Q.390, D.391, L.394, N.395, N.398, W.399, L.402 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:R.360, A:A.364, A:F.383, A:F.383, A:N.398, A:W.399, A:L.402 Hydrogen bonds: A:K.237, A:T.250, A:T.251, A:T.251, A:V.252, A:L.253, A:S.254, A:S.254, A:H.357, A:H.357, A:R.360, A:D.389, A:D.391, A:N.398, A:N.398 Water bridges: A:S.254 Salt bridges: A:K.237, A:K.237 pi-Cation interactions: A:R.360

1 x HDF: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE(Non-covalent)

HDF.2: 17 residues within 4Å: Chain A: R.12, K.13, F.37, V.38, L.39, D.40, F.43, Y.49, R.55, L.59, D.105, E.107, Y.109, A.110, R.113, K.258, F.259 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.37, A:F.43, A:L.59, A:F.259 Hydrogen bonds: A:R.12, A:V.38, A:D.40, A:R.55, A:R.55, A:D.105, A:E.107, A:E.107, A:A.110, A:R.113, A:R.113, A:K.258 Water bridges: A:V.38 pi-Stacking: A:F.43, A:F.43

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: D.323, D.371, A.478, A.481, C.482, R.485 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.485 GOL.4: 4 residues within 4Å: Chain A: R.118, T.130, D.138, D.140 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.130, A:T.130, A:D.140, A:D.140 Water bridges: A:R.118, A:D.140 GOL.5: 6 residues within 4Å: Chain A: F.339, W.450, P.471, V.473, D.474, H.475 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.475

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 6 residues within 4Å: Chain A: R.413, Y.415, S.416, V.419, F.420, K.423 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.416, A:S.416 Salt bridges: A:R.413, A:K.423

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain A: R.81 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franz, S. et al., Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii. Nucleic Acids Res. (2018)

Release Date

2018-08-01

Peptides

Cryptochrome photoreceptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cryptochrome photoreceptor

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