- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x HFG: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one(Non-covalent)
HFG.2: 17 residues within 4Å:- Chain A: W.80, R.85, Y.89, E.92, L.93, P.108, T.109, E.111, R.140, M.157, D.159, Y.161, Q.409, C.439, Y.440, G.441
- Ligands: ANP.1
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.89, A:T.109, A:D.159
- Hydrogen bonds: A:T.109, A:T.109, A:R.140, A:Q.409
- Water bridges: A:Y.89, A:R.140, A:Q.409, A:Y.417
HFG.7: 17 residues within 4Å:- Chain B: W.80, R.85, Y.89, E.92, L.93, P.108, T.109, E.111, R.140, M.157, D.159, Y.161, Q.409, C.439, Y.440, G.441
- Ligands: ANP.6
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:Y.89, B:T.109, B:D.159
- Hydrogen bonds: B:T.109, B:R.140, B:Q.409
- Water bridges: B:Y.89, B:R.140, B:Q.409
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 4 residues within 4Å:- Chain A: Y.89, G.90, P.91, E.92
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:G.90, A:E.92, B:R.99
PO4.9: 4 residues within 4Å:- Chain B: Y.89, G.90, P.91, E.92
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.99, B:G.90, B:E.92, B:E.92
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 4 residues within 4Å:- Chain A: E.209, D.219, E.406
- Ligands: ANP.1
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:E.209, A:D.219, A:E.234
- Water bridges: A:R.151, A:R.151, A:R.151, A:E.406, A:E.406
GOL.10: 4 residues within 4Å:- Chain B: E.209, D.219, E.406
- Ligands: ANP.6
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.219, B:E.234, B:E.406
- Water bridges: B:R.151, B:R.151, B:R.151, B:E.406, B:E.406
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cheng, B. et al., Structure-Guided Design of Halofuginone Derivatives as ATP-Aided Inhibitors Against Bacterial Prolyl-tRNA Synthetase. J.Med.Chem. (2022)
- Release Date
- 2019-05-29
- Peptides
- Proline--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x HFG: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cheng, B. et al., Structure-Guided Design of Halofuginone Derivatives as ATP-Aided Inhibitors Against Bacterial Prolyl-tRNA Synthetase. J.Med.Chem. (2022)
- Release Date
- 2019-05-29
- Peptides
- Proline--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A