- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: R.140, R.151
- Ligands: ANP.1
No protein-ligand interaction detected (PLIP)MG.3: 3 residues within 4Å:- Chain A: E.406, Q.409
- Ligands: ANP.1
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.406, H2O.3, H2O.4
MG.7: 3 residues within 4Å:- Chain B: R.140, R.151
- Ligands: ANP.6
No protein-ligand interaction detected (PLIP)MG.8: 3 residues within 4Å:- Chain B: E.406, Q.409
- Ligands: ANP.6
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.406, H2O.8, H2O.9
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: E.209, D.219, N.232, E.234, E.406
- Ligands: ANP.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.209, A:D.219, A:N.232
- Water bridges: A:E.209, A:E.209, A:E.234
GOL.9: 6 residues within 4Å:- Chain B: E.209, D.219, N.232, E.234, E.406
- Ligands: ANP.6
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.209, B:D.219, B:N.232, B:E.406
- 2 x 9G3: 7-chloro-6-fluoro-3-{2-oxo-3-[(2S)-piperidin-2-yl]propyl}quinazolin-4(3H)-one(Non-covalent)
9G3.5: 17 residues within 4Å:- Chain A: W.80, R.85, Y.89, E.92, L.93, P.108, T.109, E.111, R.140, M.157, D.159, Y.161, F.411, C.439, Y.440, G.441
- Ligands: ANP.1
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:T.109, A:D.159, A:F.411, A:F.411
- Hydrogen bonds: A:T.109, A:T.109, A:R.140
- Water bridges: A:R.140
- pi-Stacking: A:Y.89
9G3.10: 17 residues within 4Å:- Chain B: W.80, R.85, Y.89, E.92, L.93, P.108, T.109, E.111, R.140, M.157, D.159, Y.161, F.411, C.439, Y.440, G.441
- Ligands: ANP.6
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:T.109, B:D.159, B:F.411, B:F.411
- Hydrogen bonds: B:T.109, B:R.140
- Water bridges: B:R.140
- pi-Stacking: B:Y.89
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cheng, B. et al., Structure-Guided Design of Halofuginone Derivatives as ATP-Aided Inhibitors Against Bacterial Prolyl-tRNA Synthetase. J.Med.Chem. (2022)
- Release Date
- 2019-05-29
- Peptides
- Proline--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.07 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x 9G3: 7-chloro-6-fluoro-3-{2-oxo-3-[(2S)-piperidin-2-yl]propyl}quinazolin-4(3H)-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cheng, B. et al., Structure-Guided Design of Halofuginone Derivatives as ATP-Aided Inhibitors Against Bacterial Prolyl-tRNA Synthetase. J.Med.Chem. (2022)
- Release Date
- 2019-05-29
- Peptides
- Proline--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A