SMTL ID : 5zq0.1

Crystal structure of spRlmCD with U747loop RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x G- U- MUM- G- A- A- A- A: RNA (5'-R(*GP*UP*(MUM)P*GP*AP*AP*AP*A)-3')(Non-covalent)

G-U-MUM-G-A-A-A-A.1: 36 residues within 4Å: Chain A: S.79, G.80, I.81, R.128, K.130, A.131, Q.132, P.134, F.146, F.147, R.148, K.149, N.150, S.151, H.152, F.160, I.162, Q.163, E.188, N.248, N.250, A.251, I.252, F.282, Q.284, D.382, P.383, P.384, R.385, C.409, F.437, T.440, H.441, H.442, Q.444 Ligands: SAH.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.284, A:Q.284, A:R.385, A:Q.444 Water bridges: A:K.130, A:K.130, A:K.130, A:R.385, A:C.409 Salt bridges: A:K.130

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 17 residues within 4Å: Chain A: F.282, Q.284, Y.294, Y.313, S.314, G.315, T.318, I.319, E.334, L.335, I.336, D.360, T.361, A.362, D.382, P.384 Ligands: G-U-MUM-G-A-A-A-A.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.282 Hydrogen bonds: A:Q.284, A:T.318, A:L.335, A:A.362, A:D.382, A:D.382 Water bridges: A:Q.284, A:Q.284, A:Y.313, A:Y.313, A:E.334, A:K.386, A:K.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD. PLoS Pathog. (2018)

Release Date

2018-10-24

Peptides

Uncharacterized RNA methyltransferase SP_1029: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized RNA methyltransferase SP_1029

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