SMTL ID : 5zqc.3 (3 other biounits)

Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Ampicillin bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x AIX: (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Covalent)

AIX.1: 11 residues within 4Å: Chain A: A.61, S.62, K.65, V.98, S.122, N.124, T.227, G.228, F.229, T.230, R.261 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.229, A:F.229 Hydrogen bonds: A:S.62, A:S.122, A:S.122, A:N.124, A:F.229, A:F.229 Salt bridges: A:K.226, A:R.261

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.73, V.76, D.77, W.83, E.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.83, A:E.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, J.H. et al., Crystal Structures of Penicillin-Binding Protein D2 from Listeria monocytogenes and Structural Basis for Antibiotic Specificity. Antimicrob. Agents Chemother. (2018)

Release Date

2018-08-01

Peptides

Lmo2812 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Lmo2812 protein

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