SMTL ID : 5zqd.5 (7 other biounits)

Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Cefotaxime bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x CEF: CEFOTAXIME, C3' cleaved, open, bound form(Covalent)

CEF.1: 12 residues within 4Å: Chain A: A.61, S.62, V.98, S.122, N.124, L.164, T.212, T.227, G.228, F.229, T.230, R.261 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.212 Hydrogen bonds: A:S.62, A:S.122, A:N.124, A:T.227, A:F.229, A:F.229 Water bridges: A:K.65, A:K.65 Salt bridges: A:R.261 pi-Stacking: A:F.229

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: L.73, V.76, D.77, W.83, E.191 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.191 GOL.3: 3 residues within 4Å: Chain A: S.34, D.254, A.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, J.H. et al., Crystal Structures of Penicillin-Binding Protein D2 from Listeria monocytogenes and Structural Basis for Antibiotic Specificity. Antimicrob. Agents Chemother. (2018)

Release Date

2018-07-25

Peptides

Lmo2812 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Lmo2812 protein

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