SMTL ID : 5zsk.1

SufS from Bacillus subtilis soaked with L-cysteine for 63 sec

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.24 Å

Oligo State

homo-dimer

Ligands

2 x PDA: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID(Non-covalent)

PDA.1: 17 residues within 4Å: Chain A: A.31, A.32, T.95, T.96, H.124, N.176, D.201, A.203, Q.204, S.224, H.226, K.227, R.359, R.379 Chain B: R.57, G.277, T.278 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.31, A:A.31, A:T.95, A:T.96, A:T.96, A:Q.204, A:S.224, A:K.227, B:T.278, B:T.278 Salt bridges: A:H.226, A:R.359, A:R.379 pi-Stacking: A:H.124 PDA.2: 17 residues within 4Å: Chain A: R.57, G.277, T.278 Chain B: A.31, A.32, T.95, T.96, H.124, N.176, D.201, A.203, Q.204, S.224, H.226, K.227, R.359, R.379 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.31, B:A.31, B:T.95, B:T.96, B:T.96, B:T.96, B:Q.204, B:S.224, B:K.227, A:T.278 Salt bridges: B:H.226, B:R.359, B:R.379 pi-Stacking: B:H.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, R. et al., Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J. (2020)

Release Date

2019-05-01

Peptides

Cysteine desulfurase SufS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cysteine desulfurase SufS

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