SMTL ID : 5zt1.1 (1 other biounit)

Structure of the bacterial pathogens ATPase with substrate ATP gamma S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 13 residues within 4Å: Chain A: A.97, S.98, G.102, K.103, L.267, S.268, R.269, A.272, F.277, A.279 Ligands: MG.4, MG.5, MG.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.98, A:S.98, A:G.102, A:K.103 SO4.2: 6 residues within 4Å: Chain A: K.79, K.347, Q.348, D.349, L.352, F.354 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.349 Salt bridges: A:K.79

18 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 8 residues within 4Å: Chain A: F.74, E.89, G.90, K.181, V.182, S.235, I.236, T.237 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.235, A:T.237 MG.4: 9 residues within 4Å: Chain A: A.97, S.98, A.99, G.100, C.101, G.102, K.103 Ligands: SO4.1, MG.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.98 MG.5: 6 residues within 4Å: Chain A: A.99, G.100, C.101, G.102 Ligands: SO4.1, MG.4 No protein-ligand interaction detected (PLIP) MG.6: 7 residues within 4Å: Chain A: T.169, L.184, L.223, L.224, R.226, P.227, Y.240 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:L.223, A:Y.240 MG.7: 3 residues within 4Å: Chain A: R.92, E.225, I.260 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.225, A:I.260 MG.8: 6 residues within 4Å: Chain A: A.97, S.98, L.244, L.267, R.269 Ligands: SO4.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.98 MG.9: 7 residues within 4Å: Chain A: D.248, D.251, P.252, L.253, A.254, E.255, E.256 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.251, A:P.252 MG.10: 5 residues within 4Å: Chain A: F.105, N.108, Y.137, Y.350 Ligands: MG.18 No protein-ligand interaction detected (PLIP) MG.11: 4 residues within 4Å: Chain A: E.173, R.176, T.177, L.230 No protein-ligand interaction detected (PLIP) MG.12: 6 residues within 4Å: Chain A: I.78, K.79, V.80, P.278, L.346, Q.348 No protein-ligand interaction detected (PLIP) MG.13: 5 residues within 4Å: Chain A: S.19, V.159, C.162, Y.166, V.199 No protein-ligand interaction detected (PLIP) MG.14: 5 residues within 4Å: Chain A: L.84, L.85, S.282, S.285, R.306 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.282 MG.15: 7 residues within 4Å: Chain A: F.74, L.75, T.76, I.81, D.82, T.86, C.87 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:F.74, A:D.82 MG.16: 5 residues within 4Å: Chain A: T.190, V.242, L.243, D.251, L.253 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:L.243, A:D.251 MG.17: 6 residues within 4Å: Chain A: R.258, L.261, D.262, G.263, H.264, R.288 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.263 MG.18: 5 residues within 4Å: Chain A: F.105, N.108, M.109, Y.350 Ligands: MG.10 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:F.105 MG.19: 4 residues within 4Å: Chain A: I.95, M.107, L.110, F.185 No protein-ligand interaction detected (PLIP) MG.20: 4 residues within 4Å: Chain A: P.73, F.74, L.75, K.181 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, X. et al., Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase FromShigella flexneri. Front Microbiol (2018)

Release Date

2018-05-16

Peptides

Probable ATP synthase SpaL/MxiB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Probable ATP synthase SpaL/MxiB

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