SMTL ID : 5zt1.2 (1 other biounit)

Structure of the bacterial pathogens ATPase with substrate ATP gamma S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

monomer

Ligands

11 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.103, T.104, E.126, D.187 Ligands: AGS.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.104 MG.3: 6 residues within 4Å: Chain A: K.79, K.347, Q.348, D.349, L.352, F.354 No protein-ligand interaction detected (PLIP) MG.4: 5 residues within 4Å: Chain A: I.124, E.126, D.187, S.188, R.191 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:I.124 MG.5: 7 residues within 4Å: Chain A: I.78, K.79, V.80, P.278, F.345, L.346, Q.348 No protein-ligand interaction detected (PLIP) MG.6: 6 residues within 4Å: Chain A: G.100, C.101, G.102, K.103, T.104 Ligands: AGS.2 No protein-ligand interaction detected (PLIP) MG.7: 5 residues within 4Å: Chain A: R.258, L.261, G.263, H.264, R.288 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:R.258 MG.8: 7 residues within 4Å: Chain A: T.169, L.184, L.223, L.224, R.226, P.227, Y.240 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.169, A:Y.240 MG.9: 5 residues within 4Å: Chain A: T.190, V.242, L.243, D.251, L.253 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.251 MG.10: 4 residues within 4Å: Chain A: E.173, R.176, T.177, L.230 No protein-ligand interaction detected (PLIP) MG.11: 8 residues within 4Å: Chain A: F.74, E.89, G.90, K.181, V.182, S.235, I.236, T.237 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.235, A:T.237 MG.12: 5 residues within 4Å: Chain A: D.58, Y.166, R.222, L.223, R.226 No protein-ligand interaction detected (PLIP)

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 15 residues within 4Å: Chain A: A.99, G.100, C.101, G.102, K.103, T.104, F.105, M.109, E.130, L.243, F.277, P.278, Y.350 Ligands: MG.1, MG.6 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.100, A:G.102, A:K.103, A:K.103, A:T.104, A:T.104, A:T.104, A:F.105, A:E.130, A:E.130 Salt bridges: A:K.103 pi-Stacking: A:F.105, A:F.105, A:F.277, A:F.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, X. et al., Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase FromShigella flexneri. Front Microbiol (2018)

Release Date

2018-05-16

Peptides

Probable ATP synthase SpaL/MxiB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ATP synthase SpaL/MxiB

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