SMTL ID : 5zym.1

Crystal structure of CERT START domain in complex with compound E25B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 9M6: 2-[4-[4-cyclopentyl-3-[(1~{R},2~{S})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol(Non-covalent)

9M6.1: 14 residues within 4Å: Chain A: F.75, E.85, T.87, Q.106, H.108, R.117, Y.121, N.143, I.162, V.164, Y.192, P.198, E.214, Y.215 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.117, A:I.162, A:P.198, A:E.214, A:Y.215, A:Y.215, A:Y.215 Hydrogen bonds: A:Q.106, A:Q.106

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.22, I.167, Q.169, K.189, I.190, T.191 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.167, A:Q.169, A:T.191, A:T.191 Water bridges: A:I.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakao, N. et al., Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT. Commun Chem (2019)

Release Date

2019-02-27

Peptides

LIPID-TRANSFER PROTEIN CERT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIPID-TRANSFER PROTEIN CERT

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