SMTL ID : 6j0o.1

Crystal structure of CERT START domain in complex with compound SC1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x XAF: 2-[4-[2-fluoranyl-5-[3-(6-methylpyridin-2-yl)-1~{H}-pyrazol-4-yl]phenyl]phenyl]sulfonylethanol(Non-covalent)

XAF.1: 16 residues within 4Å: Chain A: F.75, E.85, T.87, Q.106, H.108, K.109, V.111, Y.121, N.143, I.162, V.164, Y.192, V.210, E.214, Y.215 Ligands: UNX.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.162, A:V.210, A:E.214 Hydrogen bonds: A:Q.106, A:Q.106, A:K.109, A:Y.121 Water bridges: A:R.81 pi-Stacking: A:H.108, A:Y.215

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: T.87 Ligands: XAF.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakao, N. et al., Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT. Commun Chem (2019)

Release Date

2019-02-27

Peptides

LIPID-TRANSFER PROTEIN CERT: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIPID-TRANSFER PROTEIN CERT

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