SMTL ID : 5zza.1

OdinProfilin/Rabbit Actin Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

2 x LAB: LATRUNCULIN B(Non-covalent)

LAB.1: 14 residues within 4Å: Chain A: D.102, R.104, T.105 Chain B: Y.131, V.137, Y.141, T.146, G.166, L.344, L.347, T.349, F.350, M.353, F.373 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:V.137, B:Y.141, B:T.146, B:L.344, B:L.347, B:F.350, A:T.105 Hydrogen bonds: A:R.104 Water bridges: A:D.102 Salt bridges: A:R.104 LAB.2: 15 residues within 4Å: Chain B: G.13, L.14, P.30, I.32, Q.57, Y.67, D.155, G.180, R.181, T.184, R.204, E.205, R.208, K.211 Ligands: ATP.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.30, B:I.32, B:Y.67, B:E.205 Hydrogen bonds: B:Y.67, B:D.155, B:R.208, B:K.211 Salt bridges: B:R.208

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 22 residues within 4Å: Chain B: G.11, S.12, G.13, L.14, K.16, G.72, G.154, D.155, G.156, V.157, G.180, R.181, R.208, K.211, E.212, G.299, G.300, T.301, M.303, Y.304 Ligands: LAB.2, CA.4 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:S.12, B:S.12, B:G.13, B:L.14, B:L.14, B:G.154, B:D.155, B:D.155, B:D.155, B:G.156, B:V.157, B:V.157, B:K.211, B:E.212, B:G.300, B:T.301 Water bridges: B:K.16, B:Y.304, B:K.334, B:K.334 Salt bridges: B:K.16, B:K.16 pi-Stacking: B:Y.304

1 x CA: CALCIUM ION(Non-functional Binders)

CA.4: 1 residues within 4Å: Ligands: ATP.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akil, C. et al., Genomes of Asgard archaea encode profilins that regulate actin. Nature (2018)

Release Date

2018-10-10

Peptides

Uncharacterized protein: A
Actin, alpha skeletal muscle: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
A

Uncharacterized protein

Actin, alpha skeletal muscle

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