SMTL ID : 7rb9.1

Cryo-EM structure of the rigor state Jordan myosin-15-F-actin complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-mer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: D.9, G.11, S.12, G.13, L.14, K.16, Q.135, G.154, D.155, K.211, E.212, G.300, T.301, Y.304 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.9, A:S.12, A:G.13, A:L.14, A:D.155, A:D.155, A:K.211, A:G.300 Salt bridges: A:K.16, A:K.16 pi-Stacking: A:Y.304 ADP.3: 15 residues within 4Å: Chain C: D.9, G.11, S.12, G.13, L.14, K.16, Q.135, G.154, D.155, K.211, E.212, G.300, T.301, Y.304 Ligands: MG.4 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:D.9, C:S.12, C:G.13, C:L.14, C:D.155, C:D.155, C:K.211, C:G.300 Salt bridges: C:K.16, C:K.16 pi-Stacking: C:Y.304 ADP.5: 15 residues within 4Å: Chain D: D.9, G.11, S.12, G.13, L.14, K.16, Q.135, G.154, D.155, K.211, E.212, G.300, T.301, Y.304 Ligands: MG.6 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:D.9, D:S.12, D:G.13, D:L.14, D:D.155, D:D.155, D:K.211, D:G.300 Salt bridges: D:K.16, D:K.16 pi-Stacking: D:Y.304

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: Q.135, D.152 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.152 MG.4: 3 residues within 4Å: Chain C: Q.135, D.152 Ligands: ADP.3 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.152 MG.6: 3 residues within 4Å: Chain D: Q.135, D.152 Ligands: ADP.5 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.152, D:D.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, R. et al., Structural basis for tunable control of actin dynamics by myosin-15 in mechanosensory stereocilia. Sci Adv (2022)

Release Date

2021-07-28

Peptides

Actin, alpha skeletal muscle, intermediate form: ACD
Isoform 3 of Unconventional myosin-XV: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

D
C

B
D

Actin, alpha skeletal muscle, intermediate form

Isoform 3 of Unconventional myosin-XV

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