SMTL ID : 6a1i.1

Crystal structure of a synthase 1 from Santalum album

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: W.174, K.509, E.513 Ligands: GOL.10 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.509 SO4.2: 3 residues within 4Å: Chain A: N.146, K.153, N.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.146, A:N.154 Water bridges: A:E.155

3 x CO3: CARBONATE ION(Non-functional Binders)

CO3.3: 3 residues within 4Å: Chain A: P.347, R.348, R.351 No protein-ligand interaction detected (PLIP) CO3.4: 3 residues within 4Å: Chain A: G.401, H.402, K.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.403, A:K.403 CO3.5: 7 residues within 4Å: Chain A: Y.288, A.289, M.292, E.305, F.419, L.422 Ligands: GOL.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.305

1 x NI: NICKEL (II) ION(Non-covalent)

NI.6: 2 residues within 4Å: Chain A: E.195, H.208 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.195, A:H.208, H2O.1

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: Y.288, G.309, I.417, F.419, L.422 Ligands: CO3.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.417 GOL.8: 7 residues within 4Å: Chain A: Y.167, F.171, L.211, D.212, L.213, P.214, W.217 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.184, A:D.212 Water bridges: A:Y.167 GOL.9: 6 residues within 4Å: Chain A: L.511, E.519, L.522, S.523, I.526, R.530 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.519, A:R.530, A:R.530 Water bridges: A:K.92, A:E.519, A:S.523, A:N.527 GOL.10: 2 residues within 4Å: Chain A: F.135 Ligands: SO4.1 No protein-ligand interaction detected (PLIP) GOL.11: 8 residues within 4Å: Chain A: H.209, R.218, Y.222, W.226, F.534, Q.537, W.548, Q.552 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.218, A:R.218, A:Y.222, A:Q.537, A:Q.537 Water bridges: A:W.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, X. et al., Crystal structure of a synthase 1 from Santalum album in complex with ligand. To Be Published

Release Date

2019-06-12

Peptides

Sesquisabinene B synthase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sesquisabinene B synthase 1

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