SMTL ID : 6a3h.1

2-DEOXY-2-FLURO-B-D-CELLOTRIOSYL/ENZYME INTERMEDIATE COMPLEX OF THE ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHEARANS AT 1.6 ANGSTROM RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x G2F- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-2-deoxy-2-fluoro-alpha-D-glucopyranose(Covalent)

G2F-BGC-BGC.1: 16 residues within 4Å: Chain A: H.35, W.39, Y.40, Y.66, H.101, L.103, N.138, E.139, Y.202, E.228, A.234, T.235, G.236, W.262, K.267, E.269 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.40, A:Y.66, A:H.101, A:T.235 Water bridges: A:Y.40 Halogen bonds: A:N.138

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Q.11, S.13, E.22, N.168, N.194 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.13, A:N.194 Water bridges: A:S.13, A:N.168, A:N.194 GOL.3: 7 residues within 4Å: Chain A: Q.28, K.30, G.57, N.59, I.300, S.303 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.28, A:G.57, A:N.59, A:S.303, A:S.303 GOL.4: 5 residues within 4Å: Chain A: H.9, V.27, Q.28, N.59 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.28, A:N.59 Water bridges: A:Q.26 GOL.5: 10 residues within 4Å: Chain A: G.17, E.18, L.19, M.196, L.218, A.223, I.224, N.256, L.257, S.258 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.18, A:L.19, A:I.224, A:S.258, A:S.258 GOL.6: 5 residues within 4Å: Chain A: T.146, W.147, G.148, N.149, H.184 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.147, A:G.148, A:N.149 Water bridges: A:D.181, A:H.184 GOL.7: 2 residues within 4Å: Chain A: K.81, E.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.81 Water bridges: A:K.81, A:E.84 GOL.8: 3 residues within 4Å: Chain A: K.152, E.156, Q.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.152, A:E.156 Water bridges: A:N.188 GOL.9: 3 residues within 4Å: Chain A: G.239, V.240, F.241 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, G.J. et al., Snapshots along an enzymatic reaction coordinate: analysis of a retaining beta-glycoside hydrolase. Biochemistry (1998)

Release Date

1999-07-24

Peptides

ENDOGLUCANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDOGLUCANASE

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