SMTL ID : 6acp.1

histone lysine desuccinylase Sirt5 in complex with succinyl peptide H4K91

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x TYR- ALA- LEU- SLL- ARG- GLN- GLY: succinyl peptide H4K91(Non-covalent)

TYR-ALA-LEU-SLL-ARG-GLN-GLY.1: 19 residues within 4Å: Chain A: Q.48, A.51, Y.67, R.70, I.107, H.123, V.185, V.186, W.187, F.188, G.189, E.190, N.191, L.192, L.197, V.218, V.219, Y.220, P.221 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.51, A:V.185, A:L.197, A:Y.220 Hydrogen bonds: A:R.36, A:Y.67, A:Y.67, A:V.186, A:G.189, A:E.190, A:L.192, A:Y.220, A:Y.220 Salt bridges: A:R.70

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.131, C.134, C.172, C.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:C.134, A:C.172, A:C.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hang, T.R. et al., complex structure of histone lysine desuccinylase Sirt5 with succinyl peptide H4K91. To Be Published

Release Date

2019-07-24

Peptides

NAD-dependent protein deacylase sirtuin-5, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacylase sirtuin-5, mitochondrial

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