SMTL ID : 6adl.3 (3 other biounits)

Anthrax Toxin Receptor 1-bound spent particles of Seneca Valley Virus in acidic conditions

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain C: D.115 Chain D: S.17, S.19, T.83, G.116 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Metal complexes: D:S.17, D:S.19, D:T.83, C:D.115 MG.2: 5 residues within 4Å: Chain G: D.115 Chain H: S.17, S.19, T.83, G.116 4 PLIP interactions: 1 interactions with chain G, 3 interactions with chain H Metal complexes: G:D.115, H:S.17, H:S.19, H:T.83 MG.3: 5 residues within 4Å: Chain K: D.115 Chain L: S.17, S.19, T.83, G.116 4 PLIP interactions: 1 interactions with chain K, 3 interactions with chain L Metal complexes: K:D.115, L:S.17, L:S.19, L:T.83 MG.4: 5 residues within 4Å: Chain O: D.115 Chain P: S.17, S.19, T.83, G.116 4 PLIP interactions: 3 interactions with chain P, 1 interactions with chain O Metal complexes: P:S.17, P:S.19, P:T.83, O:D.115 MG.5: 5 residues within 4Å: Chain S: D.115 Chain T: S.17, S.19, T.83, G.116 4 PLIP interactions: 3 interactions with chain T, 1 interactions with chain S Metal complexes: T:S.17, T:S.19, T:T.83, S:D.115 MG.6: 5 residues within 4Å: Chain W: D.115 Chain X: S.17, S.19, T.83, G.116 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain W Metal complexes: X:S.17, X:S.19, X:T.83, W:D.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, L. et al., Seneca Valley virus attachment and uncoating mediated by its receptor anthrax toxin receptor 1. Proc.Natl.Acad.Sci.USA (2018)

Release Date

2019-12-25

Peptides

VP1: AEIMQU
VP3: BFJNRV
VP2: CGKOSW
Anthrax toxin receptor 1: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
C

F
C

J
C

N
C

R
C

V
C

C
B

G
B

K
B

O
B

S
B

W
B

D
R

H
R

L
R

P
R

T
R

X
R

VP1

VP3

VP2

Anthrax toxin receptor 1

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