SMTL ID : 6afj.1

DJ-1 with compound 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x 73G: butyl 2-[2,3-bis(oxidanylidene)indol-1-yl]ethanoate(Non-covalent)

73G.1: 14 residues within 4Å: Chain A: E.15, E.18, G.74, G.75, N.76, C.106, A.107, H.126, L.128, A.129, K.132, P.158 Chain B: R.28, P.184 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.107, A:K.132 Hydrogen bonds: A:G.75, A:A.107 pi-Stacking: A:H.126 Water bridges: B:R.28 73G.3: 14 residues within 4Å: Chain A: R.28, P.184 Chain B: E.15, E.18, G.74, G.75, N.76, C.106, A.107, H.126, L.128, A.129, K.132, P.158 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.107, B:K.132 Hydrogen bonds: B:G.75, B:A.107 pi-Stacking: B:H.126 Water bridges: A:R.28

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: S.47, R.48, G.75, N.76 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: S.47, R.48, G.75, N.76 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tashiro, S. et al., Discovery and Optimization of Inhibitors of the Parkinson's Disease Associated Protein DJ-1. ACS Chem. Biol. (2018)

Release Date

2018-08-29

Peptides

Protein/nucleic acid deglycase DJ-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein/nucleic acid deglycase DJ-1

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