SMTL ID : 6ajy.1

Crystal structure of BRD4 in complex with 2',4'-dihydroxy-2-methoxychalcone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x A0R: 2',4'-dihydroxy-2-methoxychalcone(Non-covalent)

A0R.1: 9 residues within 4Å: Chain A: W.48, P.49, Q.52, P.53, V.54, D.55, K.58, L.59, I.113 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.48, A:P.49, A:Q.52, A:D.55, A:L.59, A:L.59, A:I.113, A:I.113 Hydrogen bonds: A:D.55, A:K.58

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: Y.104, I.105, N.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.105 NA.3: 3 residues within 4Å: Chain A: Y.32, K.127, E.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.32, A:K.127, A:E.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Structural and thermodynamic characterization of the binding of isoliquiritigenin to the first bromodomain of BRD4. Febs J. (2019)

Release Date

2019-06-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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