SMTL ID : 6ajz.1

Joint nentron and X-ray structure of BRD4 in complex with colchicin

Coordinates

PDB Format Compare

Method

NEUTRON DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x LOC: N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide(Non-covalent)

LOC.1: 12 residues within 4Å: Chain A: W.48, P.49, F.50, V.54, L.59, L.61, Y.64, C.103, Y.106, N.107, D.111, I.113 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.59, A:L.59, A:L.61, A:D.111, A:I.113 Hydrogen bonds: A:N.107, A:N.107 Water bridges: A:Y.64, A:C.103, A:I.113

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: Y.104, I.105, N.107, K.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.105, A:N.107, A:N.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Structural and thermodynamic characterization of the binding of isoliquiritigenin to the first bromodomain of BRD4. Febs J. (2019)

Release Date

2019-06-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

Related Entries With Identical Sequence