SMTL ID : 6an9.1 (1 other biounit)

Crystal structure of PPk2 class III in complex with ADP from Cytophaga hutchinsonii ATCC 33406

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: K.81, D.82, F.102, K.103, V.104, P.105, R.117, R.133, E.137, N.138, V.141, T.142, Y.148 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.82, A:R.117, A:N.138, A:N.138 Water bridges: A:D.77, A:K.81, A:K.103, A:K.103, A:V.104, A:R.117, A:R.117, A:R.117, A:R.133, A:S.219 Salt bridges: A:K.81, A:K.103, A:K.103, A:R.133, A:R.133

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: L.25, K.26, T.31, H.195, V.196, S.197, K.198, K.199, W.229, R.233 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.195, A:K.198, A:W.229, A:R.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Structural Insights into Substrate Selectivity and Activity of Bacterial Polyphosphate Kinases. Acs Catalysis (2018)

Release Date

2019-01-16

Peptides

Polyphosphate:AMP phosphotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyphosphate:AMP phosphotransferase

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