SMTL ID : 6arl.1

Aspergillus fumigatus Cytosolic Thiolase: Apo enzyme in complex with rubidium ions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

13 x RB: RUBIDIUM ION(Non-covalent)

RB.1: 3 residues within 4Å: Chain A: L.42, V.45, L.48 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.42, A:V.45, A:L.48 RB.2: 3 residues within 4Å: Chain A: D.201, E.202, I.204 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.201, A:E.202 RB.3: 6 residues within 4Å: Chain A: Y.188, E.225, A.250, P.251, S.253, V.351 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:Y.188, A:P.251, A:S.253 RB.5: 6 residues within 4Å: Chain B: Y.188, E.225, A.250, P.251, S.253, V.351 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:Y.188, B:P.251, B:S.253 RB.6: 3 residues within 4Å: Chain B: D.201, E.202, I.204 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.201, B:E.202, B:I.204 RB.7: 4 residues within 4Å: Chain B: L.42, A.43, V.45, L.48 No protein-ligand interaction detected (PLIP) RB.9: 5 residues within 4Å: Chain C: Y.188, A.250, P.251, S.253, V.351 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:Y.188, C:P.251, C:S.253, C:V.351, H2O.29 RB.10: 3 residues within 4Å: Chain C: D.201, E.202, I.204 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.201, C:I.204, H2O.31, H2O.31, H2O.31 RB.11: 3 residues within 4Å: Chain C: L.42, V.45, L.48 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:L.42, C:V.45, C:L.48 RB.14: 6 residues within 4Å: Chain D: Y.188, E.225, A.250, P.251, S.253, V.351 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:Y.188, D:P.251, D:S.253, D:V.351, H2O.42 RB.15: 3 residues within 4Å: Chain D: D.201, E.202, I.204 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.201, D:E.202, D:I.204, H2O.52 RB.16: 3 residues within 4Å: Chain D: L.42, V.45, L.48 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:L.42, D:V.45, D:L.48, H2O.49 RB.17: 4 residues within 4Å: Chain D: D.46, G.47, L.274, N.275 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:N.275

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: N.386, G.388, G.389, G.390 Chain B: R.72 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: R.72 Chain B: N.386, G.388, G.389, G.390 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain C: N.386, G.388, G.389, G.390 Chain D: R.72 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain C: R.72 Chain D: N.386, G.388, G.389, G.390 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 7 residues within 4Å: Chain C: N.228, L.229, N.230, K.233, L.234, I.237, P.251 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.230, C:N.230 GOL.18: 4 residues within 4Å: Chain D: L.22, G.23, S.24, S.26 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:L.22 Water bridges: D:S.27 GOL.19: 6 residues within 4Å: Chain D: N.228, L.229, N.230, K.233, L.234, P.251 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.230, D:N.230 Water bridges: D:N.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marshall, A.C. et al., Structure of Aspergillus fumigatus Cytosolic Thiolase: Trapped Tetrahedral Reaction Intermediates and Activation by Monovalent Cations. Acs Catalysis (2018)

Release Date

2018-05-30

Peptides

Acetyl-CoA acetyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acetyl-CoA acetyltransferase

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