SMTL ID : 6aso.1

Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

2 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)

K.1: 3 residues within 4Å: Chain A: P.100, Y.102, S.298 No protein-ligand interaction detected (PLIP) K.3: 4 residues within 4Å: Chain I: A.30, G.31, G.57, U.58 No protein-ligand interaction detected (PLIP)

1 x MN: MANGANESE (II) ION(Non-functional Binders)

MN.2: 3 residues within 4Å: Chain I: C.14, A.15, U.17 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 3 residues within 4Å: Chain I: G.42, U.45, A.46 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain I: A.11, A.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemayor, E.J. et al., Architecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA. Nat Commun (2018)

Release Date

2018-05-09

Peptides

U4/U6 snRNA-associated-splicing factor PRP24: A
U6 snRNA-associated Sm-like protein LSm2: B
U6 snRNA-associated Sm-like protein LSm3: C
U6 snRNA-associated Sm-like protein LSm4: D
U6 snRNA-associated Sm-like protein LSm5: E
U6 snRNA-associated Sm-like protein LSm6: F
U6 snRNA-associated Sm-like protein LSm7: G
U6 snRNA-associated Sm-like protein LSm8: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

U4/U6 snRNA-associated-splicing factor PRP24

U6 snRNA-associated Sm-like protein LSm2

U6 snRNA-associated Sm-like protein LSm3

U6 snRNA-associated Sm-like protein LSm4

U6 snRNA-associated Sm-like protein LSm5

U6 snRNA-associated Sm-like protein LSm6

U6 snRNA-associated Sm-like protein LSm7

U6 snRNA-associated Sm-like protein LSm8

Related Entries With Identical Sequence