SMTL ID : 6au0.1

Crystal structure of PPK2 (Class III) in complex with bisphosphonate inhibitor (2-((3,5-dichlorophenyl)amino)ethane-1,1-diyl)diphosphonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x BWJ: {[(3,5-dichlorophenyl)amino]methylene}bis(phosphonic acid)(Non-covalent)

BWJ.1: 11 residues within 4Å: Chain A: D.80, A.81, A.82, G.83, K.84, D.85, G.86, R.207, F.208, R.211, D.225 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.208 Hydrogen bonds: A:A.81, A:G.83, A:K.84, A:D.85, A:D.85, A:D.85, A:G.86, A:R.211, A:R.211 Water bridges: A:A.82 pi-Cation interactions: A:R.211 Halogen bonds: A:R.207, A:D.225

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: K.29, H.198, S.200, K.201, W.232, R.236 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.201, A:R.236 Water bridges: A:H.198, A:K.202 GOL.3: 6 residues within 4Å: Chain A: Y.117, S.158, F.170, K.173, R.174, Q.177 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.174, A:Q.177 Water bridges: A:T.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Structural Insights into Substrate Selectivity and Activity of Bacterial Polyphosphate Kinases. Acs Catalysis (2018)

Release Date

2019-01-16

Peptides

Polyphosphate:AMP phosphotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyphosphate:AMP phosphotransferase

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