SMTL ID : 6b18.1

Crystal structure of PPK3 Class III in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x C8A: {[(4-benzylphenyl)amino]methylene}bis(phosphonic acid)(Non-covalent)

C8A.1: 7 residues within 4Å: Chain A: R.211, I.212, K.217, K.220, F.221, D.225 Ligands: PO4.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.211, A:R.211, A:I.212, A:K.220, A:K.220, A:F.221 Hydrogen bonds: A:R.211, A:K.217, A:K.217, A:K.261, A:K.261 Water bridges: A:K.261 pi-Cation interactions: A:R.211

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: M.79, A.81, A.82, G.83, K.84, D.85, R.211 Ligands: C8A.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:A.81, A:A.82, A:G.83, A:K.84, A:D.85 Water bridges: A:G.83, A:D.85, A:D.85, A:G.86 Salt bridges: A:K.84, A:R.211

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: F.105, K.106, V.107, P.108, R.120, E.140, V.144, T.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.105, A:R.120, A:E.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Structural Insights into Substrate Selectivity and Activity of Bacterial Polyphosphate Kinases. Acs Catalysis (2018)

Release Date

2019-01-16

Peptides

PPK3 Class III: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PPK3 Class III

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