SMTL ID : 6awo.1

X-ray structure of the ts3 human serotonin transporter complexed with sertraline at the central site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.53 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x SRE: (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine(Non-covalent)

SRE.1: 10 residues within 4Å: Chain A: Y.22, D.25, A.96, I.99, Y.103, F.262, G.265, F.268, S.365, G.369 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.22, A:I.99, A:I.99, A:Y.103, A:F.262, A:F.262, A:F.268, A:F.268 Hydrogen bonds: A:F.262

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: G.134, N.135, H.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.134 NAG.4: 4 residues within 4Å: Chain A: N.144 Chain C: Y.49, R.54, T.56 No protein-ligand interaction detected (PLIP)

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 2 residues within 4Å: Chain A: W.500, A.507 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.500, A:W.500, A:W.500, A:W.500, A:W.500, A:A.507

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: N.28, F.32, Y.48, S.263, S.299 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: A.23, V.24, N.28, S.263, N.295 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.23 NA.7: 6 residues within 4Å: Chain A: G.21, V.24, D.25, L.361, D.364, S.365 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.21, A:D.364, A:S.365 Water bridges: A:V.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, J.A. et al., Structural basis for recognition of diverse antidepressants by the human serotonin transporter. Nat. Struct. Mol. Biol. (2018)

Release Date

2017-10-25

Peptides

Sodium-dependent serotonin transporter: A
8B6 antibody FAB heavy chain: B
8B6 antibody FAB light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Sodium-dependent serotonin transporter

8B6 antibody FAB heavy chain

8B6 antibody FAB light chain

Related Entries With Identical Sequence