SMTL ID : 6vrk.1

Cryo-EM structure of the wild-type human serotonin transporter complexed with Br-paroxetine and 8B6 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.207, N.208, H.223 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.208 NAG.2: 4 residues within 4Å: Chain A: N.217 Chain B: S.52, Y.53, R.54 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.54, B:R.54

1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.3: 13 residues within 4Å: Chain A: R.104, D.328, E.494, Y.495, G.498, P.499, T.503, F.556, L.557, P.561, Y.579, T.583, F.586 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.495, A:P.499, A:T.503, A:Y.579, A:T.583, A:F.586 Hydrogen bonds: A:R.104, A:R.104, A:D.328, A:E.494, A:E.494, A:E.494

1 x RFS: Br-paroxetine(Non-covalent)

RFS.4: 15 residues within 4Å: Chain A: Y.95, A.96, D.98, A.169, I.172, A.173, F.335, S.336, G.338, F.341, S.438, T.439, G.442, T.497, V.501 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.341, A:F.341 Hydrogen bonds: A:Y.95, A:D.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, J.A. et al., Chemical and structural investigation of the paroxetine-human serotonin transporter complex. Elife (2020)

Release Date

2020-03-11

Peptides

Sodium-dependent serotonin transporter: A
8B6 antibody, light chain: B
8B6 antibody, heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent serotonin transporter

8B6 antibody, light chain

8B6 antibody, heavy chain

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