SMTL ID : 6b0s.1

Crystal structure of circumsporozoite protein aTSR domain in complex with 1710 antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: L.45, E.46 Chain B: F.98, G.99, G.100 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:F.98, A:E.46 Water bridges: B:L.5, B:F.98, A:W.47 GOL.2: 4 residues within 4Å: Chain A: V.2, F.27, Y.32, R.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.98, A:R.98 Water bridges: A:Y.32, A:Y.32, A:Y.32, A:P.100 GOL.3: 3 residues within 4Å: Chain A: N.165, A.168, Q.202 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.165, A:Q.202 GOL.4: 4 residues within 4Å: Chain B: A.151, D.152, S.154, H.189 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.154, B:S.154, B:H.189 Water bridges: B:H.189 GOL.5: 6 residues within 4Å: Chain C: S.26, T.27, I.44, A.49, K.51, K.53 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:K.51 Water bridges: C:L.25, C:K.53, C:K.53

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.6: 6 residues within 4Å: Chain A: Y.57 Chain C: K.51, E.55, D.57, N.60, D.61 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:D.57, C:N.60 Hydrogen bonds: C:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scally, S.W. et al., Rare PfCSP C-terminal antibodies induced by live sporozoite vaccination are ineffective against malaria infection. J. Exp. Med. (2018)

Release Date

2017-11-08

Peptides

1710 antibody, heavy chain: A
1710 antibody, light chain: B
Circumsporozoite protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
C

1710 antibody, heavy chain

1710 antibody, light chain

Circumsporozoite protein

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