SMTL ID : 6b5v.1

Structure of TRPV5 in complex with econazole

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x ECL: 1-[(2R)-2-[(4-chlorobenzyl)oxy]-2-(2,4-dichlorophenyl)ethyl]-1H-imidazole(Non-covalent)

ECL.1: 7 residues within 4Å: Chain A: F.425, I.428, F.456, L.460, C.463, I.482 Chain D: A.561 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:L.460, A:L.460, D:A.561 ECL.3: 7 residues within 4Å: Chain A: A.561 Chain B: F.425, I.428, F.456, L.460, C.463, I.482 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.561, B:L.460, B:L.460 ECL.4: 7 residues within 4Å: Chain B: A.561 Chain C: F.425, I.428, F.456, L.460, C.463, I.482 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:A.561, C:L.460, C:L.460 ECL.5: 7 residues within 4Å: Chain C: A.561 Chain D: F.425, I.428, F.456, L.460, C.463, I.482 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:L.460, D:L.460, C:A.561

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.542 Chain B: D.542 Chain C: D.542 Chain D: D.542 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hughes, T.E.T. et al., Structural basis of TRPV5 channel inhibition by econazole revealed by cryo-EM. Nat. Struct. Mol. Biol. (2018)

Release Date

2017-12-27

Peptides

Transient receptor potential cation channel subfamily V member 5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 5

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