SMTL ID : 6dmu.1

PI(4,5)P2 bound full-length rbTRPV5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)

PIO.1: 7 residues within 4Å: Chain A: R.302, F.416, G.417, Q.418, T.419, K.484, R.584 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.416, A:F.416 Hydrogen bonds: A:R.302, A:Q.418 Salt bridges: A:R.302, A:K.484, A:R.584 PIO.2: 7 residues within 4Å: Chain B: R.302, F.416, G.417, Q.418, T.419, K.484, R.584 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.416, B:F.416 Hydrogen bonds: B:R.302, B:Q.418 Salt bridges: B:R.302, B:K.484, B:R.584 PIO.3: 7 residues within 4Å: Chain C: R.302, F.416, G.417, Q.418, T.419, K.484, R.584 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:F.416, C:F.416, C:F.416 Hydrogen bonds: C:R.302, C:Q.418 Salt bridges: C:R.302, C:K.484, C:R.584 PIO.4: 7 residues within 4Å: Chain D: R.302, F.416, G.417, Q.418, T.419, K.484, R.584 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:F.416, D:F.416 Hydrogen bonds: D:R.302, D:Q.418 Salt bridges: D:R.302, D:K.484, D:R.584

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hughes, T.E.T. et al., Structural insights on TRPV5 gating by endogenous modulators. Nat Commun (2018)

Release Date

2018-10-24

Peptides

Transient receptor potential cation channel subfamily V member 5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 5

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