SMTL ID : 6b5z.1

IMPase (AF2372) with 25 mM Asp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.86, T.87, F.88 Chain B: R.165, R.167 Ligands: SO4.3, INS.8 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:F.88, B:R.167 Water bridges: A:T.87, A:N.89, B:R.165 Salt bridges: B:R.165 SO4.2: 7 residues within 4Å: Chain A: R.165, R.167 Chain B: G.86, T.87, F.88 Ligands: SO4.9, INS.14 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.167, B:F.88 Salt bridges: A:R.165 Water bridges: B:G.86, B:N.89 SO4.3: 10 residues within 4Å: Chain A: E.67, D.82, L.84, D.85, G.86, T.87, D.200 Ligands: SO4.1, MG.4, INS.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.84, A:D.85, A:G.86, A:T.87, A:T.87 Water bridges: A:L.84 SO4.9: 10 residues within 4Å: Chain B: E.67, D.82, L.84, D.85, G.86, T.87, D.200 Ligands: SO4.2, MG.10, INS.14 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.86, B:T.87, B:D.200 Water bridges: B:L.84

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 5 residues within 4Å: Chain A: E.67, D.82, L.84, T.87 Ligands: SO4.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.67, A:D.82, A:L.84, H2O.2 MG.10: 4 residues within 4Å: Chain B: E.67, D.82, L.84 Ligands: SO4.9 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.67, B:D.82, B:L.84, H2O.6

6 x ASP: ASPARTIC ACID(Non-covalent)

ASP.5: 6 residues within 4Å: Chain A: R.11, A.14, G.15, Y.116, Y.118, E.125 8 PLIP interactions: 5 interactions with chain A, 3 Ligand-Ligand interactions Hydrogen bonds: A:Y.116, A:Y.116, A:Y.118, D.5, D.5, D.5 Water bridges: A:Y.118 Salt bridges: A:R.11 ASP.6: 7 residues within 4Å: Chain A: R.29, A.90, G.93, P.95, Y.97 Chain B: T.122, D.124 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.95 Hydrogen bonds: A:R.29, A:G.93, A:G.93 Water bridges: A:Y.97, A:Y.97 Salt bridges: A:R.29 ASP.7: 4 residues within 4Å: Chain A: N.151, K.164, R.165 Chain B: R.92 10 PLIP interactions: 2 Ligand-Ligand interactions, 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: D.7, D.7, A:N.151, A:R.165, B:K.43 Salt bridges: A:K.164, A:K.164, A:R.165, A:R.165, B:R.92 ASP.11: 6 residues within 4Å: Chain A: K.43, F.88, R.92 Chain B: N.151, K.164, R.165 11 PLIP interactions: 6 interactions with chain B, 1 Ligand-Ligand interactions, 4 interactions with chain A Hydrogen bonds: B:N.151, B:R.165, B:R.165 Salt bridges: B:K.164, B:R.165, B:R.165, A:K.43, A:R.92, A:R.92 Water bridges: D.11, A:K.43 ASP.12: 6 residues within 4Å: Chain B: R.11, A.14, G.15, Y.116, Y.118, E.125 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:R.11, B:Y.116, B:E.125, D.12 Salt bridges: B:R.11 ASP.13: 6 residues within 4Å: Chain B: R.29, G.93, I.94, P.95, Y.97, A.121 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Ligand interactions Hydrogen bonds: B:I.94, B:Y.97, D.13, D.13 Water bridges: B:R.29 Salt bridges: B:R.29

2 x INS: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE(Non-covalent)

INS.8: 12 residues within 4Å: Chain A: D.82, D.85, Y.155, G.170, S.171, A.172, E.175, R.191, L.196, D.200 Ligands: SO4.1, SO4.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.85, A:Y.155, A:A.172, A:R.191, A:R.191, A:D.200, A:D.200 INS.14: 11 residues within 4Å: Chain B: D.82, D.85, Y.155, G.170, S.171, A.172, R.191, L.196, D.200 Ligands: SO4.2, SO4.9 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.85, B:Y.155, B:Y.155, B:A.172, B:R.191, B:R.191, B:D.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goldstein, R.I. et al., Osmolyte binding capacity of a dual action IMPase/FBPase (AF2372). To Be Published

Release Date

2018-10-03

Peptides

Fructose-1,6-bisphosphatase/inositol-1-monophosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructose-1,6-bisphosphatase/inositol-1-monophosphatase

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