SMTL ID : 6b62.1

IMPase (AF2372) with 400 mM Glutamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 7 residues within 4Å: Chain A: R.11, A.14, G.15, R.18, Y.116, Y.118, E.125 4 PLIP interactions: 4 interactions with chain A, Hydrogen bonds: A:R.11, A:Y.116 Salt bridges: A:R.11, A:R.18 GLU.2: 5 residues within 4Å: Chain A: R.18, A.22, L.120, A.121, T.122 3 PLIP interactions: 3 interactions with chain A, Hydrogen bonds: A:T.122 Salt bridges: A:R.18, A:R.18 GLU.8: 7 residues within 4Å: Chain A: N.151, K.164, R.165 Chain B: D.32, P.41, K.43, R.92 11 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: B:K.43, B:K.43, A:N.151 Water bridges: B:R.92, E.8, E.8 Salt bridges: B:R.92, A:K.164, A:K.164, A:R.165, A:R.165 GLU.9: 8 residues within 4Å: Chain A: R.29, G.93, I.94, P.95, Y.97, A.121 Chain B: T.122 Ligands: GLU.12 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:P.95, B:T.122 Hydrogen bonds: A:G.93, A:Y.97, A:Y.97 Salt bridges: A:R.29 GLU.11: 6 residues within 4Å: Chain A: P.41, K.43, R.92 Chain B: N.151, K.164, R.165 10 PLIP interactions: 1 Ligand-Ligand interactions, 3 interactions with chain A, 6 interactions with chain B Water bridges: E.11 Hydrogen bonds: A:K.43, A:K.43, B:N.151 Salt bridges: A:R.92, B:K.164, B:K.164, B:R.165, B:R.165 Hydrophobic interactions: B:K.164 GLU.12: 7 residues within 4Å: Chain A: T.122 Chain B: R.29, G.93, P.95, Y.97, A.121 Ligands: GLU.9 8 PLIP interactions: 5 interactions with chain B, 2 Ligand-Ligand interactions, 1 interactions with chain A Hydrophobic interactions: B:P.95, A:T.122 Hydrogen bonds: B:G.93, B:Y.97, E.12, E.12 Water bridges: B:R.29 Salt bridges: B:R.29 GLU.14: 5 residues within 4Å: Chain B: R.11, G.15, R.18, Y.118, E.125 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:R.11, B:Y.118 Hydrogen bonds: B:R.11, B:G.15, B:Y.118 Water bridges: B:Y.118, B:Y.118 Salt bridges: B:R.11 GLU.15: 5 residues within 4Å: Chain B: R.18, L.120, A.121, T.122, G.123 5 PLIP interactions: 5 interactions with chain B, Hydrogen bonds: B:L.120, B:T.122 Water bridges: B:Y.118 Salt bridges: B:R.18, B:R.18

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: D.85, Y.155, G.170, S.171, A.172, R.191 Ligands: SO4.13 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.85, A:A.172, A:R.191 Water bridges: A:Y.155, A:R.191, A:R.191, B:R.167 GOL.4: 4 residues within 4Å: Chain A: K.227, D.229, Q.231, E.232 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.232 GOL.16: 8 residues within 4Å: Chain B: D.85, Y.155, G.170, S.171, A.172, R.191 Ligands: SO4.10, SO4.19 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain B Water bridges: A:R.167, B:R.191, B:R.191 Hydrogen bonds: B:D.85, B:Y.155, B:A.172, B:R.191

4 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 4 residues within 4Å: Chain A: E.67, D.82, L.84 Ligands: SO4.7 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.67, A:D.82, A:D.82, A:L.84, H2O.1 MG.6: 5 residues within 4Å: Chain A: D.38, T.40, P.41, E.67, E.68 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.38, A:T.40, A:P.41, A:E.67, A:E.68 MG.17: 5 residues within 4Å: Chain B: D.38, T.40, P.41, E.67, E.68 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.38, B:T.40, B:P.41, B:E.67, B:E.68 MG.18: 4 residues within 4Å: Chain B: E.67, D.82, L.84 Ligands: SO4.19 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.67, B:D.82, B:D.82, B:L.84, H2O.8

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 10 residues within 4Å: Chain A: E.67, D.82, L.84, D.85, G.86, T.87, R.197, D.200 Ligands: MG.5, SO4.13 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.86, A:T.87, A:D.200 Water bridges: A:E.68, A:T.87 Salt bridges: A:R.197 SO4.10: 7 residues within 4Å: Chain A: R.165, R.167 Chain B: G.86, T.87, F.88 Ligands: GOL.16, SO4.19 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:F.88, A:R.167 Water bridges: B:T.87, B:N.89, B:G.170, A:R.167 Salt bridges: A:R.165 SO4.13: 6 residues within 4Å: Chain A: T.87, F.88 Chain B: R.165, R.167 Ligands: GOL.3, SO4.7 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:F.88, B:R.167 Water bridges: A:N.89, B:R.167 Salt bridges: B:R.165 SO4.19: 11 residues within 4Å: Chain B: E.67, D.82, L.84, D.85, G.86, T.87, R.197, D.200 Ligands: SO4.10, GOL.16, MG.18 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:L.84, B:D.85, B:G.86, B:T.87, B:T.87 Water bridges: B:L.84, B:R.197 Salt bridges: B:R.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goldstein, R.I. et al., Osmolyte binding capacity of a dual action IMPase/FBPase (AF2372). To Be Published

Release Date

2018-10-03

Peptides

Fructose-1,6-bisphosphatase/inositol-1-monophosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructose-1,6-bisphosphatase/inositol-1-monophosphatase

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