SMTL ID : 6ba4.1

Crystal structure of MYST acetyltransferase domain in complex with Acetyl-CoA cofactor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.56, C.59, H.72, C.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.59, A:H.72, A:C.76

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: I.35, D.36 Ligands: NA.3, NA.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.36, A:D.36 NA.3: 5 residues within 4Å: Chain A: I.35, D.36, W.38 Ligands: NA.2, NA.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.36, A:D.36 NA.4: 3 residues within 4Å: Chain A: D.36 Ligands: NA.2, NA.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.36, A:D.36

1 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.5: 25 residues within 4Å: Chain A: W.38, F.116, L.117, S.161, C.162, I.163, M.164, I.165, Q.170, R.171, R.172, G.173, Y.174, G.175, R.176, E.196, L.199, S.200, L.202, G.203, L.205, S.206, S.209, Q.276 Ligands: 7L1.6 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.117, A:I.165, A:L.199, A:L.202 Hydrogen bonds: A:I.163, A:I.163, A:I.165, A:Q.170, A:R.171, A:R.171, A:G.173, A:G.173, A:Y.174, A:G.175, A:R.176, A:S.200, A:S.206, A:S.209, A:S.209 Water bridges: A:Q.170, A:R.172, A:R.172 pi-Cation interactions: A:R.171, A:R.171

1 x 7L1: S-{(3S,5R,9R)-1-[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} ethanethioate(Non-covalent)

7L1.6: 25 residues within 4Å: Chain A: W.38, F.116, L.117, S.161, C.162, I.163, M.164, I.165, Q.170, R.171, R.172, G.173, Y.174, G.175, R.176, P.195, E.196, L.199, S.200, L.202, G.203, L.205, S.206, S.209 Ligands: ACO.5 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.117, A:I.165, A:P.195, A:L.199, A:L.202 Hydrogen bonds: A:I.163, A:I.163, A:I.165, A:Q.170, A:R.171, A:G.173, A:Y.174, A:G.175, A:R.176, A:S.200, A:S.206, A:S.209, A:S.209 Water bridges: A:Q.170, A:R.171, A:R.172, A:R.172 Salt bridges: A:R.171 pi-Cation interactions: A:R.171, A:R.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baell, J.B. et al., Inhibitors of histone acetyltransferases KAT6A/B induce senescence and arrest tumour growth. Nature (2018)

Release Date

2018-08-01

Peptides

Histone acetyltransferase KAT8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase KAT8

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