SMTL ID : 6baq.7 (7 other biounits)

Mus musculus BPIFA1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: P.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.174

13 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: K.157, D.158, N.159 No protein-ligand interaction detected (PLIP) NA.3: 3 residues within 4Å: Chain A: G.54, L.56, G.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.56, A:G.57 Water bridges: A:G.54 NA.4: 2 residues within 4Å: Chain A: N.33 Ligands: NA.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.33 NA.5: 4 residues within 4Å: Chain A: S.220, G.221, L.222, V.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.222 NA.6: 5 residues within 4Å: Chain A: N.33, T.35, D.36, F.240 Ligands: NA.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.36 NA.7: 3 residues within 4Å: Chain A: Q.113, Q.239, V.241 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.113, A:V.241 Water bridges: A:Q.239 NA.8: 4 residues within 4Å: Chain A: T.200, K.201, P.204, E.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.201 NA.9: 2 residues within 4Å: Chain A: D.169, C.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.169, A:C.170 NA.10: 3 residues within 4Å: Chain A: L.37, G.40, K.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.37, A:K.41 Water bridges: A:G.40 NA.11: 1 residues within 4Å: Chain A: Q.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.105 NA.12: 1 residues within 4Å: Chain A: I.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.101 Water bridges: A:I.101 NA.13: 2 residues within 4Å: Chain A: D.223, T.225 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.223, A:T.225 NA.14: 4 residues within 4Å: Chain A: S.114, P.115, D.116, R.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.116, A:D.116, A:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Little, M.S. et al., Crystal structure of the mouse innate immunity factor bacterial permeability-increasing family member A1. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-05-09

Peptides

BPI fold-containing family A member 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

BPI fold-containing family A member 1

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