SMTL ID : 6bcb.1

A Complex between PH Domain of p114RhoGEF and Activated RhoA Bound to a GTP Analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.1: 25 residues within 4Å: Chain A: G.16, D.17, G.18, A.19, C.20, G.21, K.22, T.23, C.24, F.34, Y.38, V.39, P.40, T.41, A.65, G.66, Q.67, K.122, D.124, L.125, S.164, A.165, K.166 Ligands: MG.2, EDO.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.19, A:C.20, A:G.21, A:K.22, A:K.22, A:T.23, A:T.23, A:C.24, A:Y.38, A:T.41, A:G.66, A:K.122, A:K.122, A:A.165, A:K.166 Water bridges: A:L.25, A:Q.67 Salt bridges: A:K.22, A:D.124 pi-Stacking: A:F.34

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.23, T.41 Ligands: GSP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.23, A:T.41, H2O.2, H2O.3

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: T.23, C.24, P.35, V.37, Y.38, V.39 Ligands: GSP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.39, A:V.39 Water bridges: A:P.35, A:V.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Crystal structures of the PH domains from Lbc family of RhoGEFs bound to activated RhoA GTPase. Data Brief (2018)

Release Date

2017-12-13

Peptides

Transforming protein RhoA: A
Rho guanine nucleotide exchange factor 18: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
A

Transforming protein RhoA

Rho guanine nucleotide exchange factor 18

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