SMTL ID : 6be6.1 (3 other biounits)

ADAM10 Extracellular Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN.1: 14 residues within 4Å: Chain A: D.16, R.63, N.65, D.69, D.72, T.74, N.75, P.76, F.77, E.93, Q.94, V.104, K.141, K.142 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.142, A:K.142, A:R.63, A:Q.94

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.170, H.174, H.180 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.170, A:H.174, A:H.180 ZN.5: 1 residues within 4Å: Chain A: G.442 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: I.246, N.249, M.251, E.253, E.256, D.259 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:I.246, A:E.256, A:D.259

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: S.399, V.400, Q.401 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.400, A:Q.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seegar, T.C.M. et al., Structural Basis for Regulated Proteolysis by the alpha-Secretase ADAM10. Cell (2017)

Release Date

2017-12-27

Peptides

Disintegrin and metalloproteinase domain-containing protein 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Disintegrin and metalloproteinase domain-containing protein 10

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