SMTL ID : 6be6.2 (3 other biounits)

ADAM10 Extracellular Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-MAN-MAN.1: 14 residues within 4Å: Chain A: D.16, R.63, N.65, D.69, D.72, T.74, N.75, P.76, F.77, Q.94, V.104, G.140, K.141, K.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.63, A:T.74, A:Q.94

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: I.246, C.247, N.249, M.251, E.253, E.256, D.259 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:I.246, A:M.251, A:E.256, A:D.259

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: E.190, R.207, R.423 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.190 Salt bridges: A:R.207, A:R.423 SO4.4: 4 residues within 4Å: Chain A: T.184, S.191, K.192, N.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.184, A:K.192 Salt bridges: A:K.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seegar, T.C.M. et al., Structural Basis for Regulated Proteolysis by the alpha-Secretase ADAM10. Cell (2017)

Release Date

2017-12-27

Peptides

Disintegrin and metalloproteinase domain-containing protein 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Disintegrin and metalloproteinase domain-containing protein 10

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