SMTL ID : 6bg4.1 (1 other biounit)

Caspase-3 Mutant- T152D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACE- ASP- GLU- VAL- ASP- 0QE: AC-ASP-GLU-VAL-ASP-CMK(Non-covalent)

ACE-ASP-GLU-VAL-ASP-0QE.1: 17 residues within 4Å: Chain A: R.64, S.120, H.121, G.122, Q.161, C.163 Chain B: Y.29, S.30, W.31, R.32, N.33, S.34, W.39, E.73, S.74, F.75, F.81 2 PLIP interactions: 1 Ligand-Ligand interactions, 1 interactions with chain B Water bridges: E.0 Hydrogen bonds: B:S.34

5 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: Q.161 Chain B: S.30, W.31, S.38, W.39, F.40, Q.86 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:W.31, B:W.31, B:W.39, B:F.40, B:Q.86, A:Q.161 NA.4: 2 residues within 4Å: Chain A: E.124, G.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.124 Water bridges: A:G.125 NA.6: 5 residues within 4Å: Chain A: L.168, D.169 Chain B: W.31, K.84, K.85 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:W.31, B:K.85, A:D.169 NA.7: 6 residues within 4Å: Chain B: F.40, L.61, V.64, N.65, P.88, I.90 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.65, B:N.65 Water bridges: B:C.89 NA.8: 5 residues within 4Å: Chain B: T.24, A.25, Y.28, Q.86, I.87 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.25, B:I.87, B:I.87 Water bridges: B:T.24

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: K.53, G.66, T.67, D.68 Ligand excluded by PLIP

1 x AZI: AZIDE ION(Non-covalent)

AZI.5: 7 residues within 4Å: Chain A: K.137, T.140, N.141, R.144 Chain B: E.15, F.18, Y.20 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.140, A:T.140, A:N.141, B:E.15, B:Y.20 Water bridges: A:N.141, A:N.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomas, M.E. et al., Modifications to a common phosphorylation network provide individualized control in caspases. J. Biol. Chem. (2018)

Release Date

2018-02-21

Peptides

Caspase-3: A
Caspase-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Caspase-3

Caspase-3

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