SMTL ID : 6bg4.2 (1 other biounit)

Caspase-3 Mutant- T152D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACE- ASP- GLU- VAL- ASP- 0QE: AC-ASP-GLU-VAL-ASP-CMK(Non-covalent)

ACE-ASP-GLU-VAL-ASP-0QE.1: 16 residues within 4Å: Chain A: R.64, S.120, H.121, G.122, Q.161, C.163 Chain B: Y.29, S.30, W.31, R.32, N.33, S.34, W.39, E.73, S.74, F.75 24 PLIP interactions: 14 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:Y.29, B:Y.29, B:W.31, B:W.31 Hydrogen bonds: B:S.30, B:R.32, B:R.32, B:R.32, B:N.33, B:S.34, B:F.75, A:G.122, A:Q.161, A:C.163 Water bridges: B:R.32, A:T.62, A:T.62, A:S.63, A:S.65, A:S.65 Salt bridges: B:R.32, B:R.32, A:R.64, A:H.121

8 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: Q.161 Chain B: S.30, W.31, S.38, W.39, F.40, Q.86 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:W.31, B:W.31, B:W.39, B:F.40, B:Q.86, A:Q.161 NA.3: 5 residues within 4Å: Chain A: R.64, T.67, D.70, L.119, Q.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.64, A:R.64, A:D.70 NA.4: 4 residues within 4Å: Chain A: D.169 Chain B: A.25, Y.28, I.87 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.169, A:D.169 Water bridges: B:I.87 NA.6: 7 residues within 4Å: Chain A: L.151, D.152, G.153, K.156 Chain B: I.12, A.16, D.17 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.17, A:L.151, A:G.153, A:K.156 NA.7: 5 residues within 4Å: Chain A: L.168, D.169 Chain B: W.31, K.84, K.85 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.169, B:W.31, B:K.85 NA.8: 6 residues within 4Å: Chain B: W.39, V.68, A.69, F.72, K.85, Q.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.86, B:Q.86 NA.9: 5 residues within 4Å: Chain B: E.56, M.58, L.94, K.96, E.97 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.56, B:L.98 NA.10: 6 residues within 4Å: Chain B: F.40, L.61, V.64, N.65, P.88, I.90 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.61, B:N.65 Water bridges: B:C.89

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: K.53, G.66, T.67, D.68 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thomas, M.E. et al., Modifications to a common phosphorylation network provide individualized control in caspases. J. Biol. Chem. (2018)

Release Date

2018-02-21

Peptides

Caspase-3: A
Caspase-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Caspase-3

Caspase-3

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