- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA.2: 8 residues within 4Å:- Chain A: N.159, T.161, I.236
- Chain B: T.181, S.213, P.215, K.216
- Ligands: NAG.6
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.236, B:P.215
- Hydrogen bonds: B:K.216
NAG-NAG-BMA.8: 8 residues within 4Å:- Chain B: N.159, T.161, I.236
- Chain C: T.181, S.213, P.215, K.216
- Ligands: NAG.12
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:I.236, C:P.215
- Hydrogen bonds: C:K.216
NAG-NAG-BMA.14: 8 residues within 4Å:- Chain A: T.181, S.213, P.215, K.216
- Chain C: N.159, T.161, I.236
- Ligands: NAG.18
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:P.215, C:I.236
- Hydrogen bonds: A:K.216
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 3 residues within 4Å:- Chain A: E.56, N.57, Y.88
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.57, A:Y.88
- Water bridges: A:N.57
NAG.5: 3 residues within 4Å:- Chain A: Q.126, N.127, R.249
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Q.126
- Hydrogen bonds: A:N.127, A:R.249
NAG.6: 8 residues within 4Å:- Chain A: A.157, L.158, N.159, R.195, N.240, T.242
- Chain B: I.211
- Ligands: NAG-NAG-BMA.2
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:N.159
- Hydrogen bonds: A:L.158, A:R.195, A:R.195
NAG.10: 3 residues within 4Å:- Chain B: E.56, N.57, Y.88
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.57, B:Y.88
- Water bridges: B:N.57
NAG.11: 3 residues within 4Å:- Chain B: Q.126, N.127, R.249
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Q.126
- Hydrogen bonds: B:N.127, B:R.249
NAG.12: 8 residues within 4Å:- Chain B: A.157, L.158, N.159, R.195, N.240, T.242
- Chain C: I.211
- Ligands: NAG-NAG-BMA.8
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:N.159
- Hydrogen bonds: B:L.158, B:R.195, B:R.195
NAG.16: 3 residues within 4Å:- Chain C: E.56, N.57, Y.88
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.57, C:Y.88
- Water bridges: C:N.57
NAG.17: 3 residues within 4Å:- Chain C: Q.126, N.127, R.249
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:Q.126
- Hydrogen bonds: C:N.127, C:R.249
NAG.18: 8 residues within 4Å:- Chain A: I.211
- Chain C: A.157, L.158, N.159, R.195, N.240, T.242
- Ligands: NAG-NAG-BMA.14
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:N.159
- Hydrogen bonds: C:L.158, C:R.195, C:R.195
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, N.C. et al., A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site. Nat Commun (2018)
- Release Date
- 2018-02-28
- Peptides
- Hemagglutinin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, N.C. et al., A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site. Nat Commun (2018)
- Release Date
- 2018-02-28
- Peptides
- Hemagglutinin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A