- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-GAL-SIA.5: 14 residues within 4Å:- Chain A: Y.92, G.128, T.129, S.130, S.131, W.147, T.149, H.177, D.184, F.187, L.188, D.219, I.220, S.222
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.187, A:L.188, A:W.147, A:T.149
- Water bridges: A:D.184, A:D.184, A:T.129, A:T.129
- Hydrogen bonds: A:D.219, A:T.129, A:S.131, A:S.222
NAG-GAL-SIA.15: 14 residues within 4Å:- Chain B: Y.92, G.128, T.129, S.130, S.131, W.147, T.149, H.177, D.184, F.187, L.188, D.219, I.220, S.222
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:F.187, B:L.188, B:W.147, B:T.149
- Water bridges: B:D.184, B:D.184, B:T.129, B:T.129
- Hydrogen bonds: B:D.219, B:T.129, B:S.131, B:S.222
NAG-GAL-SIA.25: 14 residues within 4Å:- Chain C: Y.92, G.128, T.129, S.130, S.131, W.147, T.149, H.177, D.184, F.187, L.188, D.219, I.220, S.222
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:F.187, C:L.188, C:W.147, C:T.149
- Water bridges: C:D.184, C:D.184, C:T.129, C:T.129
- Hydrogen bonds: C:D.219, C:T.129, C:S.131, C:S.222
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 3 residues within 4Å:- Chain A: E.56, N.57, Y.88
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.57, A:Y.88
- Water bridges: A:N.57
NAG.7: 2 residues within 4Å:- Chain A: Q.126, N.127
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.127
- Water bridges: A:R.249
NAG.16: 3 residues within 4Å:- Chain B: E.56, N.57, Y.88
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.57, B:Y.88
- Water bridges: B:N.57
NAG.17: 2 residues within 4Å:- Chain B: Q.126, N.127
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.127
- Water bridges: B:R.249
NAG.26: 3 residues within 4Å:- Chain C: E.56, N.57, Y.88
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.57, C:Y.88
- Water bridges: C:N.57
NAG.27: 2 residues within 4Å:- Chain C: Q.126, N.127
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.127
- Water bridges: C:R.249
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 6 residues within 4Å:- Chain A: H.12, V.14, T.31, N.32, T.312
- Ligands: NAG-NAG.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.12, A:N.32, A:T.312, A:T.312
- Water bridges: A:T.31
PEG.18: 6 residues within 4Å:- Chain B: H.12, V.14, T.31, N.32, T.312
- Ligands: NAG-NAG.11
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.12, B:N.32, B:T.312, B:T.312
- Water bridges: B:T.31
PEG.28: 6 residues within 4Å:- Chain C: H.12, V.14, T.31, N.32, T.312
- Ligands: NAG-NAG.21
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:H.12, C:N.32, C:T.312, C:T.312
- Water bridges: C:T.31
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 5 residues within 4Å:- Chain A: S.118, F.119, N.120, W.121, Q.126
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:F.119, A:N.120, A:W.121, A:Q.126, A:Q.126
- Water bridges: A:E.117
SO4.10: 2 residues within 4Å:- Chain A: I.28, R.315
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.315
- Salt bridges: A:R.315
SO4.19: 5 residues within 4Å:- Chain B: S.118, F.119, N.120, W.121, Q.126
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:F.119, B:N.120, B:W.121, B:Q.126, B:Q.126
- Water bridges: B:E.117
SO4.20: 2 residues within 4Å:- Chain B: I.28, R.315
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.315
- Salt bridges: B:R.315
SO4.29: 5 residues within 4Å:- Chain C: S.118, F.119, N.120, W.121, Q.126
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:F.119, C:N.120, C:W.121, C:Q.126, C:Q.126
- Water bridges: C:E.117
SO4.30: 2 residues within 4Å:- Chain C: I.28, R.315
2 PLIP interactions:2 interactions with chain C- Water bridges: C:R.315
- Salt bridges: C:R.315
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, N.C. et al., A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site. Nat Commun (2018)
- Release Date
- 2018-02-28
- Peptides
- Hemagglutinin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, N.C. et al., A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site. Nat Commun (2018)
- Release Date
- 2018-02-28
- Peptides
- Hemagglutinin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A