SMTL ID : 6bns.1

STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN BOUND TETHERED WITH SRC co-activator peptide and Compound 25a AKA BICYCLIC HEXAFLUOROISOPROPYL 2 ALCOHOL SULFONAMIDES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-dimer

Ligands

2 x XGH: 2-[(2S)-4-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)-3,4-dihydro-2H-1,4-benzothiazin-2-yl]-N-(2-hydroxy-2-methylpropyl)acetamide(Non-covalent)

XGH.1: 16 residues within 4Å: Chain A: L.84, L.87, V.89, P.105, I.114, L.117, L.118, M.121, S.125, W.177, Y.184, H.285, L.289, I.292, F.298, M.303 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.89, A:P.105, A:I.114, A:Y.184 Hydrogen bonds: A:L.87 pi-Stacking: A:W.177 Halogen bonds: A:M.121, A:S.125 XGH.2: 19 residues within 4Å: Chain B: L.84, L.87, K.88, V.89, P.105, I.114, S.116, L.117, L.118, M.121, S.125, F.166, W.177, Y.184, M.201, H.285, I.292, F.298, M.303 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:P.105, B:I.114, B:Y.184 Hydrogen bonds: B:L.87 Water bridges: B:L.117 pi-Stacking: B:W.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, H. et al., Identification of bicyclic hexafluoroisopropyl alcohol sulfonamides as retinoic acid receptor-related orphan receptor gamma (ROR gamma /RORc) inverse agonists. Employing structure-based drug design to improve pregnane X receptor (PXR) selectivity. Bioorg. Med. Chem. Lett. (2018)

Release Date

2017-12-20

Peptides

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1 Chimera: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1 Chimera

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