SMTL ID : 6brr.1

Crystal structure of DNMT3A (R836A)-DNMT3L in complex with DNA containing two CpG sites

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.97 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: F.13, D.14, G.15, I.16, T.18, S.36, E.37, V.38, C.39, D.59, V.60, G.80, P.82, L.103, R.264, S.265, W.266 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:I.16, A:T.18, A:V.38, A:C.39, A:S.42, A:D.59, A:V.60, A:W.266, A:W.266 pi-Stacking: A:F.13 SAH.2: 19 residues within 4Å: Chain C: F.13, D.14, G.15, I.16, T.18, S.36, E.37, V.38, C.39, S.42, D.59, V.60, R.61, G.80, P.82, L.103, R.264, S.265, W.266 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:I.16, C:T.18, C:V.38, C:C.39, C:S.42, C:D.59, C:V.60, C:R.61, C:R.264, C:W.266 pi-Stacking: C:F.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z.M. et al., Structural basis for DNMT3A-mediated de novo DNA methylation. Nature (2018)

Release Date

2018-01-31

Peptides

DNA (cytosine-5)-methyltransferase 3A: AC
DNA (cytosine-5)-methyltransferase 3-like: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

D
C

DNA (cytosine-5)-methyltransferase 3A

DNA (cytosine-5)-methyltransferase 3-like

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