- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLI: MALONATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 9 residues within 4Å:- Chain A: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
- Ligands: PDO.4
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.297, A:Q.349, A:P.351, A:G.354, H2O.2
CA.14: 10 residues within 4Å:- Chain B: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354, G.355
- Ligands: PDO.17
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.297, B:A.346, B:P.351, B:G.354, H2O.13
CA.25: 9 residues within 4Å:- Chain C: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
- Ligands: PDO.28
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.297, C:A.346, C:Q.349, C:P.351, C:G.354
CA.32: 8 residues within 4Å:- Chain D: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.297, D:Q.349, D:P.351, D:G.354, H2O.35
- 24 x PDO: 1,3-PROPANDIOL(Non-covalent)
PDO.3: 7 residues within 4Å:- Chain A: E.6, V.7, F.8, R.9, L.255, V.290, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.7, A:R.362
- Water bridges: A:V.7
PDO.4: 11 residues within 4Å:- Chain A: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, D.352, G.353
- Ligands: CA.2
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.222
- Hydrogen bonds: A:A.346
- Water bridges: A:H.348
PDO.5: 5 residues within 4Å:- Chain A: K.77, K.78, V.117, A.118, F.119
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.119
- Water bridges: A:D.147
PDO.6: 9 residues within 4Å:- Chain A: R.272, L.275, K.276, I.280, R.281, S.282, D.283, M.286, V.334
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.280, A:D.283
PDO.7: 9 residues within 4Å:- Chain A: F.123, L.124, P.125, L.128, P.164, L.165, L.166, R.170, L.238
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.125
- Hydrogen bonds: A:L.165, A:R.170
- Water bridges: A:R.170
PDO.8: 5 residues within 4Å:- Chain A: R.121, E.127, M.131, E.132, N.135
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.121, A:E.127, A:E.127, A:N.135
PDO.9: 6 residues within 4Å:- Chain A: T.57, V.76, F.81, E.236, L.237, E.241
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.237
- Hydrogen bonds: A:E.241
- Water bridges: A:F.81, A:E.236
PDO.10: 5 residues within 4Å:- Chain A: S.14, D.16, D.17, I.18, S.19
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain A- Water bridges: B:V.235, A:D.16, A:D.16, A:S.19
- Hydrogen bonds: A:D.17, A:D.17
PDO.11: 7 residues within 4Å:- Chain A: T.167, A.168, E.169, R.170
- Chain B: A.13
- Chain D: R.308, D.313
6 PLIP interactions:2 interactions with chain D, 3 interactions with chain A, 1 interactions with chain B- Water bridges: D:R.308, D:R.308
- Hydrophobic interactions: A:E.169
- Hydrogen bonds: A:A.168, A:E.169, B:A.13
PDO.12: 5 residues within 4Å:- Chain A: R.305, G.306, R.307
- Chain C: G.336, D.337
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.336
PDO.15: 7 residues within 4Å:- Chain B: E.6, V.7, F.8, R.9, L.255, V.290, R.362
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.7, B:R.362
- Water bridges: B:V.7
PDO.16: 8 residues within 4Å:- Chain B: R.272, L.275, K.276, I.280, R.281, S.282, D.283, M.286
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.276, B:R.281
PDO.17: 12 residues within 4Å:- Chain B: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, D.352, G.353
- Ligands: CA.14, PDO.21
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.222
- Hydrogen bonds: B:A.346
- Water bridges: B:H.348
PDO.18: 5 residues within 4Å:- Chain B: R.305, G.306, R.307
- Chain D: G.336, D.337
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:R.307, D:D.337
PDO.19: 7 residues within 4Å:- Chain B: Y.187, N.318
- Chain C: D.185, Y.187, D.314, S.315, N.318
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:N.318, C:D.185
- Water bridges: B:Y.187, C:D.314
PDO.20: 12 residues within 4Å:- Chain B: E.88, G.89, I.317, R.321, S.322, A.325
- Chain D: E.88, G.89, I.317, R.321, S.322, A.325
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:A.325
PDO.21: 7 residues within 4Å:- Chain B: Y.187, K.188, A.191, R.194, H.319, E.347
- Ligands: PDO.17
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:E.347
- Water bridges: B:A.191, B:H.319, B:H.319, C:D.185
PDO.22: 6 residues within 4Å:- Chain B: E.207, I.208, N.223, L.224, Y.225, S.227
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:Y.225
- Hydrogen bonds: B:N.223, B:Y.225
- Water bridges: B:S.227, B:S.227
PDO.23: 4 residues within 4Å:- Chain B: I.18, S.19, A.22, Y.63
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.18
- Water bridges: B:S.19, B:T.23, B:Y.63
PDO.26: 7 residues within 4Å:- Chain C: E.6, V.7, F.8, R.9, L.255, V.290, R.362
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:V.7
- Water bridges: C:E.6, C:E.6, C:V.7
PDO.27: 12 residues within 4Å:- Chain A: E.88, G.89, I.317, R.321, S.322, A.325
- Chain C: E.88, G.89, I.317, R.321, S.322, A.325
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:A.325
- Hydrogen bonds: A:G.89, C:S.322
- Water bridges: A:S.322
PDO.28: 14 residues within 4Å:- Chain C: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, Q.349, G.350, P.351, D.352, G.353
- Ligands: CA.25
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:W.222, C:E.347
- Hydrogen bonds: C:H.348, C:Q.349, C:G.350
- Water bridges: C:A.346, C:E.347
PDO.29: 6 residues within 4Å:- Chain C: K.77, K.78, V.117, A.118, F.119, E.143
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.77, C:F.119
- Water bridges: C:V.117, C:E.143
PDO.30: 9 residues within 4Å:- Chain C: R.272, L.275, K.276, I.280, R.281, S.282, D.283, M.286, V.334
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.281, C:D.283
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, K. et al., Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One (2019)
- Release Date
- 2019-06-12
- Peptides
- Cyanuric acid amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLI: MALONATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 24 x PDO: 1,3-PROPANDIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, K. et al., Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One (2019)
- Release Date
- 2019-06-12
- Peptides
- Cyanuric acid amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D