- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLI: MALONATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 9 residues within 4Å:- Chain A: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
- Ligands: PEG.7
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.346, A:Q.349, A:P.351, A:G.354, H2O.2
CA.11: 10 residues within 4Å:- Chain B: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354, G.355
- Ligands: PDO.13
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:A.346, B:Q.349, B:P.351, B:G.354, H2O.14
CA.17: 8 residues within 4Å:- Chain C: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:A.346, C:Q.349, C:P.351, C:G.354, H2O.23
CA.23: 8 residues within 4Å:- Chain D: E.297, A.346, Q.349, G.350, P.351, D.352, G.353, G.354
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.297, D:A.346, D:Q.349, D:P.351, H2O.31
- 11 x PDO: 1,3-PROPANDIOL(Non-covalent)
PDO.3: 12 residues within 4Å:- Chain A: E.88, G.89, I.317, R.321, S.322, A.325
- Chain C: E.88, G.89, I.317, R.321, S.322, A.325
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:A.325
- Water bridges: C:S.322
- Hydrogen bonds: A:S.322
PDO.4: 7 residues within 4Å:- Chain A: E.6, V.7, F.8, R.9, L.255, V.290, R.362
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.8
- Hydrogen bonds: A:V.7, A:R.362
- Water bridges: A:V.7
PDO.5: 7 residues within 4Å:- Chain A: K.188, A.191, Y.192, C.219, W.222, E.347
- Ligands: PEG.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.191, A:Y.192
- Hydrogen bonds: A:K.188
PDO.6: 4 residues within 4Å:- Chain A: H.157, H.259, S.260, D.277
1 PLIP interactions:1 interactions with chain A- Water bridges: A:H.259
PDO.8: 5 residues within 4Å:- Chain A: K.77, K.78, V.117, A.118, F.119
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.117
- Hydrogen bonds: A:K.77
PDO.12: 8 residues within 4Å:- Chain B: E.6, V.7, F.8, R.9, K.29, L.255, V.290, R.362
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.7, B:V.7, B:R.362
PDO.13: 12 residues within 4Å:- Chain B: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, D.352, G.353
- Ligands: CA.11, WDL.19
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.222
- Water bridges: B:E.297, B:H.348
PDO.14: 5 residues within 4Å:- Chain B: E.207, I.208, N.223, L.224, Y.225
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.223, B:Y.225, B:Y.225
PDO.18: 9 residues within 4Å:- Chain B: C.47, V.48, T.186, Y.187, N.318
- Chain C: L.312, D.313, D.314, S.315
9 PLIP interactions:4 interactions with chain C, 5 interactions with chain B- Water bridges: C:D.314, C:S.315, C:N.318, C:N.318, B:Y.187, B:Y.187, B:N.318
- Hydrophobic interactions: B:V.48, B:Y.187
PDO.20: 10 residues within 4Å:- Chain C: W.222, E.297, A.298, A.299, S.300, A.346, E.347, H.348, D.352, G.353
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.222
- Water bridges: C:A.346, C:H.348
PDO.21: 7 residues within 4Å:- Chain C: E.6, V.7, F.8, R.9, L.255, V.290, R.362
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.8
- Hydrogen bonds: C:V.7, C:V.7
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x WDL: 1,3,5-triazine-2,4,6-triol(Non-covalent)
WDL.10: 16 residues within 4Å:- Chain B: K.41, G.46, D.50, R.53, S.84, G.85, K.162, M.190, R.194, S.232, A.233, R.324, V.342, S.343, G.344
- Ligands: MLI.9
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:G.46, B:R.53, B:S.84, B:G.85, B:G.85, B:K.162, B:R.194, B:S.232, B:A.233, B:A.233, B:R.324, B:S.343, B:G.344
WDL.16: 15 residues within 4Å:- Chain C: K.41, G.46, R.53, M.83, S.84, G.85, K.162, M.190, R.194, S.232, A.233, R.324, S.343, G.344
- Ligands: MLI.15
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:G.46, C:R.53, C:S.84, C:G.85, C:K.162, C:R.194, C:S.232, C:A.233, C:R.324, C:S.343, C:G.344, C:G.344
WDL.19: 10 residues within 4Å:- Chain B: K.188, S.300, L.312, H.319
- Chain C: A.168, I.171, N.184, D.185, T.186
- Ligands: PDO.13
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain B- Water bridges: C:A.168, C:N.184, C:T.186, C:T.186, B:S.300
- Hydrogen bonds: B:K.188
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, K. et al., Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One (2019)
- Release Date
- 2019-06-12
- Peptides
- Cyanuric acid amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLI: MALONATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 11 x PDO: 1,3-PROPANDIOL(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 3 x WDL: 1,3,5-triazine-2,4,6-triol(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, K. et al., Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One (2019)
- Release Date
- 2019-06-12
- Peptides
- Cyanuric acid amidohydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D